Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| KICH | rs78773881 | chr1:85880460 | C/A | 8.92E-7 | 64 | 67.47 | 60.5 | 20.75 | KM Plot |
| KICH | rs7898562 | chr10:19725184 | A/G | 2.53E-13 | 62 | 65.47 | 23.8 | 10.83 | KM Plot |
| KICH | rs79230837 | chr3:136788190 | T/C | 7.03E-14 | 64 | 63.63 | 68.8 | 10.83 | KM Plot |
| KICH | rs79270241 | chr14:91786484 | T/C | 3.62E-6 | 65 | 65.47 | 73.7 | 26.33 | KM Plot |
| KICH | rs79272198 | chr5:40675966 | G/T | 5.54E-7 | 64 | 63.23 | 89.1 | 16.9 | KM Plot |
| KICH | rs79408322 | chr2:101746943 | G/T | 6.24E-8 | 63 | 66.1 | 48.72 | 19.67 | KM Plot |
| KICH | rs79417562 | chr9:116528291 | T/G | 7.63E-7 | 63 | 67.47 | 55.5 | 16.9 | KM Plot |
| KICH | rs797565 | chr6:136614850 | T/A | 0 | 63 | 65.47 | 75.97 | 13.87 | KM Plot |
| KICH | rs797566 | chr6:136615512 | A/G | 0 | 63 | 65.47 | 75.97 | 13.87 | KM Plot |
| KICH | rs7975944 | chr12:6848634 | G/T | 1.15E-6 | 62 | 63.23 | 66.82 | 16.9 | KM Plot |
| KICH | rs79965992 | chr2:43748079 | G/A | 5.91E-8 | 63 | 63.23 | 83.58 | 19.67 | KM Plot |
| KICH | rs80164976 | chr1:85874960 | A/C | 8.92E-7 | 64 | 67.47 | 60.5 | 20.75 | KM Plot |
| KICH | rs855823 | chr1:64361960 | G/T | 7.3E-7 | 64 | 20.75 | 37.37 | 71.25 | KM Plot |
| KICH | rs855824 | chr1:64361979 | G/C | 7.36E-7 | 64 | 20.75 | 45.53 | 68.8 | KM Plot |
| KICH | rs855826 | chr1:64363268 | T/G | 7.36E-7 | 64 | 20.75 | 45.53 | 68.8 | KM Plot |